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The data mining tools that have been on our Knowledge Base for many years were developed to allow users to access our functional genomics SQL database to rapidly identify key genomic features and drug sensitivities of over 60 breast cancer cell lines. Recently, we have dramatically expanded the scope of our functional genomics analysis app to allow users to mine functional genomics and drug sensitivity data for over 1000 cancer cell lines of all cancer types. The types of genomic data that are accessed in these apps include:
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copy number data
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gene expression data
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point mutation data
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gene essentiality data (both from RNAi and CRISPR screens)
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drug sensitivity data
Click here to get to our Gene Query app for all cancer cell lines.
Then, proceed to the KEGG Pathway Engine app to see graphical displays of gene expression, CRISPR or RNAi screen data projected onto any KEGG pathway of interest. Once a particular pathway is chosen, the actual data for all genes in the chosen pathway will be presented in tabular form and mapped onto the pathway.
NEW!! Check out our new functional genomics app for all cancer cell lines. Everything you could ever want to know about virtually any cancer cell line can be found here. Note also that this app can be downloaded to your computer, phone, or laptop. Just click the Install button. Have fun!
